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Replicating hypergraph disease dynamics with lower-order interactions
Phys. Rev. E 113, 014315 – Published 23 January, 2026
DOI: https://doi.org/10.1103/6whh-kvk7
Abstract
Disease spreading models such as the ubiquitous SIS compartmental model and its numerous variants are widely used to understand and predict the behavior of a given epidemic or information diffusion process. A common approach to imbue more realism to the spreading process is to constrain simulations to a network structure, where connected nodes update their disease state based on pairwise interactions along the edges of their local neighborhood. Simplicial contagion models (SCM) extend this to hypergraphs such that groups of three nodes are able to interact and propagate the disease along higher-order hyperedges (triangles). Though more flexible, it is not clear the extent to which the inclusion of these higher-order interactions results in dynamics that are characteristically different from those attained from simpler pairwise interactions. Here, we propose an agent-based model that unifies the classical SIS/SIR compartmental model and SCM, and extends it to allow for interactions along hyperedges of arbitrary order. Using this model, we demonstrate how the steady-state dynamics of pairwise interactions can be made to replicate those of simulations that include higher-order topologies by linearly scaling disease parameters based on a proposed measure of network activity. By allowing disease parameters to dynamically vary over time, lower-order pairwise interactions can be made to closely replicate both the transient and steady-state dynamics of higher-order simulations. We demonstrate that this relationship is robust to misspecification in the assumed higher-order interaction model, and applies to non-clique complex hypergraphs with nontrivial heterogeneous topology. For the latter case, it is found that heterogeneities in hypergraph topology result in weakened approximations of higher-order dynamics by pairwise interactions.
Physics Subject Headings (PhySH)
Article Text
Spreading processes over a given topology are ubiquitous across many social and physical systems. From epidemics to information diffusion, many studies aim to understand the governing rules of spreading processes in social contexts . Nevertheless, the influence of the underlying topology on which spreading occurs can sometimes be as important as the mechanistic rules governing the spreading process . This consideration is crucial in the study of contagion and epidemics on social networks, where local properties like degree and clustering can mediate nontrivial dynamics such as super-spreader events and endemic states .
Recent approaches propose the inclusion of interactions along higher-order topologies such as simplices (e.g., triangles and tetrahedrons) to account for social interactions that include more individuals than pairwise interactions . The inclusion of higher-order interactions has been shown to promote critical transitions and bistability in epidemics . However, the importance that they play in altering the overall epidemic trajectory remains an active area of research. Current work has also explored the effect of simplicial contagion processes on infection paths on hypergraphs . Several analytical methods have also been developed to better understand the governing factors of unique simplicial contagion behaviours such as hysteresis, bistability, and reduced epidemic thresholds .
In this work, we present a discrete numerical model that generalizes the classical SIS/SIR compartmental model with homogeneous mixing to account for hyperedge interactions of arbitrary order. Comparing dynamics with and without higher-order interactions, we find that topology primarily affects epidemic transients. If the network structure is known, one can calculate normalization values related to the potential network activity. These values may be used to define disease parameters for first-order pairwise interactions that replicate the steady state dynamics of those that include higher-order interactions, but are insufficient for reproducing epidemic transients. However, we find a duality where the effects of network topology can be overcome by allowing for temporally varying disease parameters, allowing first-order dynamics to closely approximate both transient and steady-state trajectories of higher-order systems.
In addition to requiring knowledge of the order scaling of interaction dynamics, the normalization approach makes two assumptions regarding the hypergraph topology. Namely, that (1) all hypergraphs are defined as clique complexes, and (2) macroscale topological features are uniformly distributed across the network. To investigate the robustness of the results, tests are conducted on cases where the scaling function is incorrect. We show robustness to model misspecification provided the size scales of the maximal infection amplification between the true and misspecified scaling functions are of similar order. These results are broadly aligned with the recent analytical results by where mean-field approximations of pairwise interactions were able to capture features of simplicial contagion. We also extend analyses to artificial and empirical networks that do not adhere to Assumptions (1) and (2) and show robustness of results when disease parameters are allowed to temporally vary. Further inspection of the network structure and component hyperedge activities suggests that nontrivial macroscale heterogeneities in hypergraph topologies limit the approximation of higher-order dynamics by pairwise interactions.
We begin by presenting a variation of the classical compartmental ODE model , focusing on the three-compartment case with susceptible-infected-removed (SIR) states,
whereThe simple SIR model assumes that populations homogeneously mix. However, this is not true for human populations where disease spread occurs on a social contact network. Here, individuals—represented as nodes—interact within a small neighborhood with occasional branching, clustering, or long-range connections . One can simulate more realistic spread dynamics by employing an agent-based approach where randomly selected nodes interact with all or a collection of their neighbors every time step . Whilst this node-based approach is more realistic for modeling the diffusion of abstract quantities such as information, it is not necessarily adequate for disease contagion as it treats individuals rather than interactions as facilitators of infection. It is unlikely for an individual to interact with all of their neighbors in a given time step. Instead, we propose simulating diseases on networks using an edge-based approach.
Let
where
where
The proposed numerical model achieves two goals. First, it unifies the classical homogeneous ODE disease model with the existing SCM up to order
where
Identifying dynamical differences between networks with and without interactions on higher-order topologies requires an appropriate normalization that allows for comparison. Thus, we consider two candidate quantities related to the rate of new infection
The first quantity, called the combinatorial network activity
where
and approximates
Similarly, an exact network activity
where
To identify the role of higher-order interactions in disease spreading dynamics, we pose the following question: Can pairwise interactions replicate higher-order dynamics using an appropriate normalization?
We address this question using the case of SIS dynamics with baseline disease parameters
Given an undirected
This normalization ensures that simulations on both
This test is run on two
SI epidemic trajectories between the pairwise and higher-order simulations. Accompanying activity ratios are shown on the right, revealing a saturation to 1 as the epidemic reaches the endemic steady state. Dotted trajectory in the unnormalized case corresponds to enabling higher-order interactions in pairwise simulation.
A base case with unnormalized infection rates is run as a control. Enabling higher-order interactions after the pairwise system settles pushes the steady state align with the higher-order scenario. For the test case, applying a normalization based on the ratio of each network's combinatorial network activity results in epidemic trajectories whose steady state in the
The capacity for networks with the same initial activity to reproduce epidemic steady states naturally leads the discussion to a second related question: Under what minimal conditions can pairwise interactions be used to replicate the full dynamics as those of higher-order? We again perform similar tests consisting of two parallel simulations with separate disease parameters, with the exception that the infection rate of the
For simulating adaptive disease parameters, we first calculate the moving average of the exact network activity ratios in both hypergraphs,
whereThe adjustment of
Results for the normalization tests with dynamically varying disease parameters are shown in Fig. . We find that the dynamical adjustment of disease parameters allows for first-order (pairwise) simulations to replicate those of higher order in both transient and steady-state regimes. Furthermore, we note that the adjustments of disease parameters are infrequent, with two to four adjustment events occurring across 700 simulated time steps in each simulation. A majority of adjustments occur during the first half of the transient regime. These results suggest a duality between network topology and disease parameters. Namely, the effects of higher-order interactions may be partially accounted for in first-order approximations through the presence of dynamic disease parameters.
Simulations with dynamic disease parameters with
All of the previous tests focus on the SIS disease scenario, which is characterized by an epidemic transient followed by a steady-state regime where the disease is either eradicated or remains in endemic. A more interesting, and arguably challenging case, is that of SIR, where infection trajectories exhibit a single peak during the epidemic's transient phase.
We extend our analyses to this case and test the dynamic adjustment of infection rates applied across a range of base disease parameter values
Phase plots of the peak time, peak, and final proportions for the simulated SIR model with dynamic disease parameters. The top and bottom rows correspond to the pairwise
While the thresholds imposed for the adaptive adjustment of disease parameters are relatively mild, the network activity normalization method requires extensive knowledge about the scaling of spreading dynamics up to the
The parameter
We simulate disease dynamics for trajectory pairs of
All of the cases analyzed so far make two key assumptions pertaining to the network topology on which disease dynamics occur: (1) All hypergraphs are defined as clique complexes and (2) macroscale topological features are uniformly distributed across the network. We first elaborate further on the importance and meaning of these two characteristics, and present additional tests on their impact on the pairwise to higher-order relationship.
The assumption that all hypergraphs belong to a family of clique complexes of some maximal order
For the second assumption, we clarify “macroscale topological features” to include the various centrality measures of a given node and “uniformly distributed” to mean that the occurrence of a locally significant topological feature (e.g., hubs and high degree) can occur on any node in the network. Therefore, this assumption describes that a given node's connectivity is not conditioned on its neighbors' local topology.
This assumption can be described more generally by considering the deviation of local properties from their neighborhood. For networks, let
where
For example, in the case of small-world networks—such as those generated using the Watts-Strogatz algorithm —shortcut nodes may arise anywhere in the network. For a random Erdös-Rényi network, local heterogeneity—nodes with abnormally high degrees—have equal probability to occur anywhere within the network. In terms of node deviations, this implies
where
One can also consider large deviations in terms of distributions. For networks with small deviations, given a local network measure of interest
Examples that do not possess this characteristic are those that arise from preferential-attachment mechanisms such as the Barabási-Albert (BA) scale-free network model . In this case, high-degree nodes (i.e., hubs) will always remain close together in the network due to the preferential attachment mechanism, and thus result in a highly localized distribution of
One point of interest is to test the robustness of the network activity normalization methods on network topologies that do not adhere well to the abovementioned topological assumptions. For this, we consider both artificial randomly generated networks and two different empirical networks taken from contact data that exhibit nontrivial local topologies. For the artificial case, we choose to study a randomly generated BA scale-free
To demonstrate application to real data, two empirical networks describing human contact were taken from existing publicly available resources. The first is a network of Australian politicians with edges representing mutually liked Facebook pages from November 2017 . The second is a fictional contact network derived from conflicts present in the entire collection of movies from the Marvel Cinematic Universe (MCU) from the Aleph Zero Heroes dataset compiled by Roughan et al. . Visualizations of both networks are given in Fig. . Both cases showcase features suggestive of preferential attachment with a high-degree center and tree-like or low-degree exteriors.
Visualization of tested empirical networks with associated node classifications shown. Politician affiliations correspond to either Australian political parties or general political alignment. Hero alignment corresponds to the classification of an MCU hero as either a protagonist or antagonist. (a) Australian politicians Facebook interactions and (b) marvel cinematic universe (MCU) conflicts.
In addition to examining the impact of base network structures, we also test the importance of the clique complex Assumption (1) by randomly removing hyperedges such that higher-order hyperedges no longer contain all their subcliques and thus breaking any implied downward closure of higher-order interactions . This is done using the following pruning algorithm:
-
(1) Given an undirected pairwise adjacency matrix
, construct its clique complex hypergraph up to order . -
(2) Let
be the starting maximal order. For each -th order hyperedge , delete with probablity .-
(a) If no deletion occurred, continue to the next hyperedge.
-
(b) If deletion occurred, identify all child clique complexes of order
and recursively repeat for all subsequent children. -
(c) If a child is a hyperedge of order
, then only allow the deletion of the edge if the pairwise network remains connected.
-
-
(3) Repeat step 2 with decreasing starting order
until .
An important feature of the above edge deletion algorithm is that lower-order hyperedges experience more deletion events due to the recursive structure of the algorithm. For low to moderate deletion probabilities
We repeat similar tests as those outlined in Secs. and across the five previously mentioned networks, and
In all tested networks, we find that a single initial normalization of disease parameters using the combinatorial network activity
To better understand the cause for this failure, a variant of the combinatorial network activity is used as an alternative normalization. In this case, a surrogate network state is constructed where half of all nodes are assigned an infected state
The superior performance of the hyperdegree weighted network activity is due to a closer resemblance between the surrogate network state and the likely true network state, where higher-degree nodes will tend to have a higher probability of being infected. This can be seen by looking at the distribution of activities associated with each hyperedge in the combinatorial, degree weighted, and true exact network activity cases at a given infection proportion
Frequency distributions of network edge activities assuming an infected proportion of
Interestingly, we note that the degree-weighted approach still fails to properly replicate epidemic transients. One may consider a naïve extension of the degree-weighted network activity that is normalized based on the true current proportions of infected
As seen in Fig. , the exact activity normalization methods performed well across all tested networks and for moderately high levels of edge deletion, with the exception of
In this work, we quantify the effect of higher-order topologies on the spreading dynamics on networks. Focusing on the single disease case, we have presented an agent-based model that unifies the classical compartmental SIR model of homogeneous mixing with pairwise simplicial contagion models on networks, and extends it to account for interactions on hyperedges of arbitrary order. We use this model in conjunction with a normalization method based on the notion of network activity to compare spread dynamics across hypergraphs of different maximal orders.
We first consider the restricted case of clique complexes with uniformly distributed macroscale topological features for both SIS and SIR dynamics. The inclusion of higher-order topology is found to primarily affect the transient dynamics in epidemic trajectories. Using carefully chosen disease parameters such that initial combinatorial network activities are approximately equal, simulations restricted to pairwise (order 1) interactions are able to replicate the steady-state behaviours resulting from higher-order interactions. Furthermore, a sufficiently accurate normalization can be calculated purely based on the network topology, network state, and the scaling function describing the higher-order interaction. We find that allowing disease parameters to dynamically vary over time is sufficient for pairwise simulations to reproduce full trajectories of higher-order interactions. Thus, we conclude that there is a duality between topological effects and the stationarity of disease parameters.
The proposed normalization method based on network activities makes several assumptions, such as having knowledge of the scaling function, and having a clique complex structure with relatively mild macroscale heterogeneities. While the findings are theoretically interesting, these assumptions impose heavy constraints on applicability as real-world systems rarely fulfill these conditions. To this end, we test the robustness of the network activity approach toward model misspecification and non-clique hypergraphs with nontrivial topology taken from empirical data. Overall, all results are relatively robust to model misspecification due to scale and functional form errors. In contrast, we find that network topology plays a larger role where networks with macroscale heterogeneities—such as social networks or those arising from preferential attachment mechanisms—where higher-order interactions are not as easily or robustly approximated by pairwise interactions. This result is particularly true for cases where disease parameters are kept static.
The ability for pairwise interaction models to reproduce epidemic trajectories from models containing higher-order complexity features raises interesting questions on the need for higher-order features to be included in disease models. Furthermore, it encourages a reconsideration of whether dynamics, observed or modeled, should be attributed as the result of complex topological structure or temporally varying spreading mechanisms. The above tests focus on epidemic trajectories, which represent summaries of the disease averaged across the entire network. These results invite further questions on the similarity of spreading dynamics on the local scale of a given network and whether the order of infection events between individuals differs between interactions of different orders. One can also consider the effect of incubation and immunity refractory periods, which may impart a form of time delay in the infection process, resulting in more dynamic disease parameters. On application, network activities offer a potential way to construct adaptive rewiring strategies that can be used to maintain a sustainable level of infection.
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